Publications

2024

1.Herbert Levine, et al.(2024), Reconstruction of single-cell lineage trajectories and identification of diversity in fates during the epithelial-to-mesenchymal transition, PNAS, 121(32), e2406842121.

2. Herbert Levine, et al.(2024), RACER-m leverages structural features for sparse T cell specificity prediction. Science Advances, 10, eadl0161.

3. Herbert Levine, et al.(2024), Nucleosomes play a dual role in regulating transcription dynamics, PNAS, 121(28),e2319772121

4. Herbert Levine, et al.(2024), Machine learning meets physics: A two-way street, PNAS, 121(27), e2403580121

5. Herbert Levine, et al.(2024), Dual role of CASP8AP2/FLASH in regulating epithelial-to-mesenchymal transition plasticity (EMP), Translational Oncology, 39, 101837.

6. Herbert Levine, et al.(2024), Computational modeling of cancer cell metabolism along the catabolic-anabolic axes, bioRxiv. https://doi.org/10.1101/2024.08.15.608169

7. Herbert Levine, David A. Kessler(2024), Pulse instabilities can shape virus-immune coevolution, Physical Review Research, 6(3), 033300.

8. Michele Di Pierro, et al.(2024), Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample, Cell, 187(7), 3541–3562.

2021

1. Herbert Levine, et al.(2021), A Theoretical Approach to Coupling the Epithelial-Mesenchymal Transition (EMT) to Extracellular Matrix (ECM) Stiffness via LOXL2, Cancers, 13(7), 1609.

2. Herbert Levine, et al.(2021), Towards decoding the coupled decision-making of metabolism and epithelial-to-mesenchymal transition in cancer, British Journal of Cancer https://doi.org/10.1038/s41416-021-01385-y

2020

1. Herbert Levine, et al.(2020),Gene expression profiles of inflammatory breast cancer reveal high heterogeneity across the epithelial-hybrid-mesenchymal spectrum, Translational Oncology, 14, 101026